Oral conference presentations

  • Chengsheng Zhu, Tom Delmont, Timothy Vogel and Yana Bromberg.
    Functional basis of microorganism classification

  • Iakes Ezkurdia, Jose Manuel Rodriguez, Enrique Carrillo-De Santa Pau, Jesús Vázquez, Alfonso Valencia and Michael Tress
    Most highly expressed protein-coding genes have a single dominant isoform

  • Panu Somervuo and Liisa Holm
    SANSparallel: Interactive homology search against Uniprot

  • Igor Jurisica
    In silico prediction of physical protein interactions and characterization of interactome orphans

  • David Jakubec, Jiri Hostas, Roman Laskowski, Pavel Hobza and Jiri Vondrasek
    Large-Scale Quantitative Assessment of Binding Preferences in Protein–Nucleic Acid Complexes

  • Sun Sook Chung, Alessandro Pandini, Alessia Annibale, Anthony C. C. Coolen, N. Shaun B. Thomas and Franca Fraternali
    Bridging topological and functional information in protein interaction networks by short loops profiling.

  • Anthony Mathelier, Calvin Lefebvre, Allen Zhang, David Arenillas, Jiarui Ding, Wyeth Wasserman and Sohrab Shah
    Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas

  • Pier Paolo Olimpieri, Paolo Marcatili and Anna Tramontano.
    Antibody humanization: the contribution of computational biology

  • Christian Tönsing, Jens Timmer and Clemens Kreutz.
    Cause and Cure of Sloppiness in Ordinary Differential Equation Models

  • Lars Malmstroem.
    Quantitative proteogenomics of human pathogens using DIA-MS

  • Fabrizio Benedetti, Julien Dorier, Yannis Burnier and Andrzej Stasiak.
    Brownian dynamics simulations of topological domains in interphase chromosomes; advantages of supercoiling.

  • José Aguilar-Rodríguez, Joshua Payne and Andreas Wagner.
    1000 empirical adaptive landscapes and their navigability

  • Lucila Aimo, Robin Liechti, Nevila Hyka-Nouspikel, Anne Niknejad, Anne Gleizes, Lou Gotz, Dmitry Kuznetsov, Fabrice David, F. Gisou van der Goot, Ioannis Xenarios, Howard Riezman, Lydie Bougueleret and Alan Bridge.
    The SwissLipids knowledge base for lipid biology

  • Johannes Barth and Christian Fufezan.
    Enhancing proteome data using big data techniques

  • Julien Roux, Irene Hernando-Herraez, Tomas Marques-Bonet and Yoav Gilad.
    A genomic study of the contribution of DNA methylation to regulatory evolution in primates

  • Gaston Gonnet.
    Human-Dog-Mouse, an example of the difficulty of proving Non-tree-like phylogenies

  • Frederic B. Bastian, Anne Niknejad, Marta Rosikiewicz, Sébastien Moretti, Valentine Rech De Laval and Marc Robinson-Rechavi.
    The Bgee database: large-scale multi-species expression data

  • Benjamin Engelhardt, Maik Kschischo and Holger Fröhlich.
    Detection of Hidden Influences and Missed Reactions in Quantitative Models of Biological Systems

  • Jack Kuipers, Katharina Jahn and Niko Beerenwinkel.
    Tree inference for single cell data

  • Sebastian Salentin, Sven Schreiber, V. Joachim Haupt, Melissa F. Adasme and Michael Schroeder.
    PLIP: fully automated protein-ligand interaction profiler

  • Anne-Christin Hauschild, Jörg Ingo Baumbach and Jan Baumbach.
    Novel Developments In Computational Clinical Breath Analysis and Biomarker Detection

  • Olivier Bignucolo, Hoi Tik Alvin Leung, Stephan Grzesiek and Simon Bernèche.
    Backbone hydration determines the folding signature of amino acid residues

  • Nadja Kryuchkova-Mostacci and Marc Robinson-Rechavi.
    Tissue specificity evolution of protein coding genes in vertebrates

  • Denis Kazakiewicz, Jonathan R. Karr, Karol M. Langner and Dariusz Plewczynski.
    Combined systems and structural modeling repositions antibiotics for ​Mycoplasma genitalium

  • Yolanda Schaerli, Andreea Munteanu, Magüi Gili, James Cotterell, James Sharpe and Mark Isalan.
    Exploring the design space of stripe-forming networks

  • Pedro L. Varela, Adrien Fauré, Claudine Chaouiya and Pedro T. Monteiro.
    A computational framework for the logical modelling of epithelial patterning

  • Sayed-Rzgar Hosseini, Aditya Barve and Andreas Wagner.
    Exhaustive Analysis of a Genotype Space Comprising 10^15 Central Carbon Metabolisms Reveals an Organization Conducive to Metabolic Innovation

  • Atul Sethi, Ruth Huttenhain, Yansheng Liu, Daniela Dinulescu, Emma Nimeus-Malmstrom and Ruedi Aebersold.
    Genomics guided discovery and verification of blood-based protein biomarkers of serous ovarian cancer

  • Ritu Khare, Burger John, John Aberdeen, Teddy Corrales, Emily Doughty, Rajashree Mishra, David Tresner-Kirsch, Benjamin Wellner, Chih-Hsuan Wei, Maricel Kann, Lynette Hirschman and Zhiyong Lu.
    Biocuration meets text mining and crowdsourcing

  • Patrick Fried and Dagmar Iber.
    Dynamic scaling of morphogen gradients on growing domains

  • Helen Lindsay, Alexa Burger, Jonas Zaugg, Christian Mosimann and Mark Robinson.
    Analysing the CRISPR-Cas9 mutation spectrum  with crispRvariants

  • Andrew Nightingale, Tunca Dogan, Maria Martin and Rengul Cetin-Atalay.
    UniProt functional positional annotations and protein altering variants in reference genomes and their contributions to translational biology studies.

  • Serghei Mangul, Timothy Daley, Nicolas Strauli, Ryan Hernandez, Roel Ophoff, Andrew Smith, Max Seibold, Eleazar Eskin and Noah Zaitlen.
    Dumpster Diving: Finding the source of every last read.

  • Davide Alocci and Frédérique Lisacek.
    Graph database VS RDF triple stores:  a comparison on glycan substructure search.

  • Samira Asgari, Stéphanie Anchisi, Christian Hammer, Istvan Bartha, Paul Mclaren, Dominique Garcin, Luregn Schlapbach and Jacques Fellay.
    Genomic Insights into Innate immunity against Viral Respiratory Infections in Pediatric Population

  • Istvan Bartha, Paul McLaren and Jacques Fellay.
    Estimating the respective contributions of human and viral genetic variation to HIV control

  • Monica Zoppe'.
    BioBlender 2.0. Molecular biology in a narrative form

  • Sipko van Dam, Thomas Craig and Joao Pedro de Magalhaes.
    GeneFriends: A human RNA-seq-based gene and transcript co-expression database.

  • Linda Dib.
    Bridging macroevolution and microevolution in light of brain diseases

  • Mingfu Shao.
    Comparing genomes with rearrangements and segmental duplications

  • Carlota Rubio-Perez, David Tamborero, Michael Philipp Schroeder, Albert Antolin, Jordi Deu-Pons, Christian Perez-Llamas, Jordi Mestres, Abel Gonzalez-Perez and Nuria Lopez-Bigas.
    In Silico Prescription of Anticancer Drugs to Cohorts of 28 Tumor Types Reveals Targeting Opportunities

  • Ana Viñuela, Martijn Bunt, Nikolay Oskolkov, Cedric Howald, Joao Fadista, Nikolaos Panousis, Petter Storm, Patrick MacDonald, Mark McCarthy, Leif Groop, Anna Gloyn and Emmanouil Dermitzakis.
    The genetic regulatory landscape of the human pancreatic islet transcriptome

  • Martino Bertoni, Lorenza Bordoli and Torsten Schwede.
    Modeling protein quaternary structure and complexes using evolutionary interaction fingerprints